Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
TGCT rs35327698 chr3:172471102 G/T 5.36E-5 133 42.1 41.92 47.38 KM Plot
TGCT rs35333149 chr7:127778236 T/TAAA 2.16E-9 133 42.1 42.15 12.55 KM Plot
TGCT rs35336279 chr19:37952215 CTT/C 5.97E-7 133 45.47 37.53 17.48 KM Plot
TGCT rs35354193 chr7:128727794 G/A 2.02E-5 132 42.18 37.1 17.1 KM Plot
TGCT rs35414340 chr7:128723194 C/T 1.67E-5 134 42.27 31.17 17.1 KM Plot
TGCT rs35420742 chr3:172489940 G/A 5.36E-5 132 42.1 46.3 47.38 KM Plot
TGCT rs35421489 chr13:100283620 T/G 1.85E-5 127 36.37 47.52 45.83 KM Plot
TGCT rs35445794 chr3:172563289 A/T 7.16E-7 132 42.18 52.08 24.15 KM Plot
TGCT rs35518304 chr7:128732319 C/T 2.04E-5 132 42.27 32.95 17.1 KM Plot
TGCT rs35521928 chr12:107132808 AT/A 3.98E-12 134 41.97 49.93 24.27 KM Plot
TGCT rs35540940 chr19:38008235 G/A 1.39E-13 134 46.3 35.37 17.1 KM Plot
TGCT rs35552227 chr7:128622088 C/CT 1.69E-5 134 42.27 30.3 17.1 KM Plot
TGCT rs35563200 chr17:691685 T/TA 6.84E-5 132 20.6 25.47 45.83 KM Plot
TGCT rs35644760 chr2:3488871 C/T 2.43E-5 131 39.38 74.47 25.32 KM Plot
TGCT rs35754677 chr13:21847842 C/CA 1.26E-6 130 46.77 36.1 14.42 KM Plot